TreeMicInterV1, Main, Exploration, bibRecord, 000057

The Functional Potential of the Rhizospheric Microbiome of an Invasive Tree Species, Acacia dealbata.

Identifieur interne : 000057 ( Main/Exploration ); précédent : 000056; suivant : 000058

The Functional Potential of the Rhizospheric Microbiome of an Invasive Tree Species, Acacia dealbata.

Auteurs : Casper N. Kamutando [Afrique du Sud] ; Surendra Vikram [Afrique du Sud] ; Gilbert Kamgan-Nkuekam [Afrique du Sud] ; Thulani P. Makhalanyane [Afrique du Sud] ; Michelle Greve [Afrique du Sud] ; Johannes J. Le Roux [Afrique du Sud] ; David M. Richardson [Afrique du Sud] ; Don A. Cowan [Afrique du Sud] ; Angel Valverde [Afrique du Sud]

Source :

Microbial ecology [ 1432-184X ] ; 2019.

RBID : pubmed:29948018

Descripteurs français

KwdFr :
- ADN bactérien (génétique), Acacia (croissance et développement), Acacia (microbiologie), Analyse de séquence d'ADN (MeSH), Azote (métabolisme), Bactéries (classification), Bactéries (génétique), Bradyrhizobium (génétique), Bradyrhizobium (métabolisme), Développement des plantes (MeSH), Espèce introduite (MeSH), Fixation de l'azote (génétique), Gènes bactériens (génétique), Interactions microbiennes (physiologie), Microbiologie du sol (MeSH), Microbiote (génétique), Microbiote (physiologie), Métabolisme glucidique (MeSH), Métagénome (MeSH), Phylogenèse (MeSH), Protéines bactériennes (génétique), Rhizobium (génétique), Rhizobium (physiologie), Rhizosphère (MeSH), République d'Afrique du Sud (MeSH), Vitamines (métabolisme).
MESH :
- croissance et développement : Acacia.
- génétique : ADN bactérien, Bactéries, Bradyrhizobium, Fixation de l'azote, Gènes bactériens, Microbiote, Protéines bactériennes, Rhizobium.
- microbiologie : Acacia.
- métabolisme : Azote, Bradyrhizobium, Vitamines.
- physiologie : Interactions microbiennes, Microbiote, Rhizobium.
- Analyse de séquence d'ADN, Développement des plantes, Espèce introduite, Microbiologie du sol, Métabolisme glucidique, Métagénome, Phylogenèse, Rhizosphère, République d'Afrique du Sud.
Wicri :
- geographic : Afrique du Sud.

English descriptors

KwdEn :
- Acacia (growth & development), Acacia (microbiology), Bacteria (classification), Bacteria (genetics), Bacterial Proteins (genetics), Bradyrhizobium (genetics), Bradyrhizobium (metabolism), Carbohydrate Metabolism (MeSH), DNA, Bacterial (genetics), Genes, Bacterial (genetics), Introduced Species (MeSH), Metagenome (MeSH), Microbial Interactions (physiology), Microbiota (genetics), Microbiota (physiology), Nitrogen (metabolism), Nitrogen Fixation (genetics), Phylogeny (MeSH), Plant Development (MeSH), Rhizobium (genetics), Rhizobium (physiology), Rhizosphere (MeSH), Sequence Analysis, DNA (MeSH), Soil Microbiology (MeSH), South Africa (MeSH), Vitamins (metabolism).
MESH :
- chemical , genetics : Bacterial Proteins, DNA, Bacterial.
- chemical , metabolism : Vitamins.
- geographic : South Africa.
- classification : Bacteria.
- genetics : Bacteria, Bradyrhizobium, Genes, Bacterial, Microbiota, Nitrogen Fixation, Rhizobium.
- growth & development : Acacia.
- metabolism : Bradyrhizobium, Nitrogen.
- microbiology : Acacia.
- physiology : Microbial Interactions, Microbiota, Rhizobium.
- Carbohydrate Metabolism, Introduced Species, Metagenome, Phylogeny, Plant Development, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology.

Abstract

Plant-microbe interactions mediate both the invasiveness of introduced plant species and the impacts that they have in invaded ecosystems. Although the phylogenetic composition of the rhizospheric microbiome of Acacia dealbata (an invasive Australian tree species) has been investigated, little is known about the functional potential of the constituents of these altered microbial communities. We used shotgun DNA sequencing to better understand the link between bacterial community composition and functional capacity in the rhizospheric microbiomes associated with invasive A. dealbata populations in South Africa. Our analysis showed that several genes associated with plant growth-promoting (PGP) traits were significantly overrepresented in the rhizospheric metagenomes compared to neighbouring bulk soils collected away from A. dealbata stands. The majority of these genes are involved in the metabolism of nitrogen, carbohydrates and vitamins, and in various membrane transport systems. Overrepresented genes were linked to a limited number of bacterial taxa, mostly Bradyrhizobium species, the preferred N-fixing rhizobial symbiont of Australian acacias. Overall, these findings suggest that A. dealbata enriches rhizosphere soils with potentially beneficial microbial taxa, and that members of the genus Bradyrhizobium may play an integral role in mediating PGP processes that may influence the success of this invader when colonizing novel environments.

DOI: 10.1007/s00248-018-1214-0
PubMed: 29948018

Affiliations:

Afrique du Sud

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Le document en format XML

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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Acacia (growth & development)</term>
<term>Acacia (microbiology)</term>
<term>Bacteria (classification)</term>
<term>Bacteria (genetics)</term>
<term>Bacterial Proteins (genetics)</term>
<term>Bradyrhizobium (genetics)</term>
<term>Bradyrhizobium (metabolism)</term>
<term>Carbohydrate Metabolism (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Genes, Bacterial (genetics)</term>
<term>Introduced Species (MeSH)</term>
<term>Metagenome (MeSH)</term>
<term>Microbial Interactions (physiology)</term>
<term>Microbiota (genetics)</term>
<term>Microbiota (physiology)</term>
<term>Nitrogen (metabolism)</term>
<term>Nitrogen Fixation (genetics)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Development (MeSH)</term>
<term>Rhizobium (genetics)</term>
<term>Rhizobium (physiology)</term>
<term>Rhizosphere (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Soil Microbiology (MeSH)</term>
<term>South Africa (MeSH)</term>
<term>Vitamins (metabolism)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term>
<term>Acacia (croissance et développement)</term>
<term>Acacia (microbiologie)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Azote (métabolisme)</term>
<term>Bactéries (classification)</term>
<term>Bactéries (génétique)</term>
<term>Bradyrhizobium (génétique)</term>
<term>Bradyrhizobium (métabolisme)</term>
<term>Développement des plantes (MeSH)</term>
<term>Espèce introduite (MeSH)</term>
<term>Fixation de l'azote (génétique)</term>
<term>Gènes bactériens (génétique)</term>
<term>Interactions microbiennes (physiologie)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Microbiote (génétique)</term>
<term>Microbiote (physiologie)</term>
<term>Métabolisme glucidique (MeSH)</term>
<term>Métagénome (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protéines bactériennes (génétique)</term>
<term>Rhizobium (génétique)</term>
<term>Rhizobium (physiologie)</term>
<term>Rhizosphère (MeSH)</term>
<term>République d'Afrique du Sud (MeSH)</term>
<term>Vitamines (métabolisme)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Bacterial Proteins</term>
<term>DNA, Bacterial</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Vitamins</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en"><term>South Africa</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Bacteria</term>
</keywords>
<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Acacia</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacteria</term>
<term>Bradyrhizobium</term>
<term>Genes, Bacterial</term>
<term>Microbiota</term>
<term>Nitrogen Fixation</term>
<term>Rhizobium</term>
</keywords>
<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Acacia</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term>
<term>Bactéries</term>
<term>Bradyrhizobium</term>
<term>Fixation de l'azote</term>
<term>Gènes bactériens</term>
<term>Microbiote</term>
<term>Protéines bactériennes</term>
<term>Rhizobium</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Bradyrhizobium</term>
<term>Nitrogen</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Acacia</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Acacia</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Azote</term>
<term>Bradyrhizobium</term>
<term>Vitamines</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Interactions microbiennes</term>
<term>Microbiote</term>
<term>Rhizobium</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Microbial Interactions</term>
<term>Microbiota</term>
<term>Rhizobium</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Carbohydrate Metabolism</term>
<term>Introduced Species</term>
<term>Metagenome</term>
<term>Phylogeny</term>
<term>Plant Development</term>
<term>Rhizosphere</term>
<term>Sequence Analysis, DNA</term>
<term>Soil Microbiology</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Développement des plantes</term>
<term>Espèce introduite</term>
<term>Microbiologie du sol</term>
<term>Métabolisme glucidique</term>
<term>Métagénome</term>
<term>Phylogenèse</term>
<term>Rhizosphère</term>
<term>République d'Afrique du Sud</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Afrique du Sud</term>
</keywords>
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<front><div type="abstract" xml:lang="en">Plant-microbe interactions mediate both the invasiveness of introduced plant species and the impacts that they have in invaded ecosystems. Although the phylogenetic composition of the rhizospheric microbiome of Acacia dealbata (an invasive Australian tree species) has been investigated, little is known about the functional potential of the constituents of these altered microbial communities. We used shotgun DNA sequencing to better understand the link between bacterial community composition and functional capacity in the rhizospheric microbiomes associated with invasive A. dealbata populations in South Africa. Our analysis showed that several genes associated with plant growth-promoting (PGP) traits were significantly overrepresented in the rhizospheric metagenomes compared to neighbouring bulk soils collected away from A. dealbata stands. The majority of these genes are involved in the metabolism of nitrogen, carbohydrates and vitamins, and in various membrane transport systems. Overrepresented genes were linked to a limited number of bacterial taxa, mostly Bradyrhizobium species, the preferred N-fixing rhizobial symbiont of Australian acacias. Overall, these findings suggest that A. dealbata enriches rhizosphere soils with potentially beneficial microbial taxa, and that members of the genus Bradyrhizobium may play an integral role in mediating PGP processes that may influence the success of this invader when colonizing novel environments.</div>
</front>
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</PubDate>
</JournalIssue>
<Title>Microbial ecology</Title>
<ISOAbbreviation>Microb Ecol</ISOAbbreviation>
</Journal>
<ArticleTitle>The Functional Potential of the Rhizospheric Microbiome of an Invasive Tree Species, Acacia dealbata.</ArticleTitle>
<Pagination><MedlinePgn>191-200</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1007/s00248-018-1214-0</ELocationID>
<Abstract><AbstractText>Plant-microbe interactions mediate both the invasiveness of introduced plant species and the impacts that they have in invaded ecosystems. Although the phylogenetic composition of the rhizospheric microbiome of Acacia dealbata (an invasive Australian tree species) has been investigated, little is known about the functional potential of the constituents of these altered microbial communities. We used shotgun DNA sequencing to better understand the link between bacterial community composition and functional capacity in the rhizospheric microbiomes associated with invasive A. dealbata populations in South Africa. Our analysis showed that several genes associated with plant growth-promoting (PGP) traits were significantly overrepresented in the rhizospheric metagenomes compared to neighbouring bulk soils collected away from A. dealbata stands. The majority of these genes are involved in the metabolism of nitrogen, carbohydrates and vitamins, and in various membrane transport systems. Overrepresented genes were linked to a limited number of bacterial taxa, mostly Bradyrhizobium species, the preferred N-fixing rhizobial symbiont of Australian acacias. Overall, these findings suggest that A. dealbata enriches rhizosphere soils with potentially beneficial microbial taxa, and that members of the genus Bradyrhizobium may play an integral role in mediating PGP processes that may influence the success of this invader when colonizing novel environments.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kamutando</LastName>
<ForeName>Casper N</ForeName>
<Initials>CN</Initials>
<AffiliationInfo><Affiliation>Centre for Microbial Ecology and Genomics, Department of Genetics, University of Pretoria, Pretoria, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Vikram</LastName>
<ForeName>Surendra</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Centre for Microbial Ecology and Genomics, Department of Genetics, University of Pretoria, Pretoria, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kamgan-Nkuekam</LastName>
<ForeName>Gilbert</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Centre for Microbial Ecology and Genomics, Department of Genetics, University of Pretoria, Pretoria, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Makhalanyane</LastName>
<ForeName>Thulani P</ForeName>
<Initials>TP</Initials>
<AffiliationInfo><Affiliation>Centre for Microbial Ecology and Genomics, Department of Genetics, University of Pretoria, Pretoria, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Greve</LastName>
<ForeName>Michelle</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Department of Plant and Soil Sciences, University of Pretoria, Pretoria, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Le Roux</LastName>
<ForeName>Johannes J</ForeName>
<Initials>JJ</Initials>
<AffiliationInfo><Affiliation>Centre for Invasion Biology, Department of Botany & Zoology, Stellenbosch University, Stellenbosch, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Richardson</LastName>
<ForeName>David M</ForeName>
<Initials>DM</Initials>
<AffiliationInfo><Affiliation>Centre for Invasion Biology, Department of Botany & Zoology, Stellenbosch University, Stellenbosch, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Cowan</LastName>
<ForeName>Don A</ForeName>
<Initials>DA</Initials>
<AffiliationInfo><Affiliation>Centre for Microbial Ecology and Genomics, Department of Genetics, University of Pretoria, Pretoria, South Africa.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Valverde</LastName>
<ForeName>Angel</ForeName>
<Initials>A</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0003-0439-9605</Identifier>
<AffiliationInfo><Affiliation>Centre for Microbial Ecology and Genomics, Department of Genetics, University of Pretoria, Pretoria, South Africa. valverdeportala@ufs.ac.za.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Microbial, Biochemical and Food Biotechnology, University of the Free State, P.O. Box 339, Bloemfontein, Free State, 9300, South Africa. valverdeportala@ufs.ac.za.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y"><Grant><GrantID>CPRR14071676470</GrantID>
<Agency>National Research Foundation of South Africa (NRF)</Agency>
<Country></Country>
</Grant>
</GrantList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2018</Year>
<Month>06</Month>
<Day>09</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Microb Ecol</MedlineTA>
<NlmUniqueID>7500663</NlmUniqueID>
<ISSNLinking>0095-3628</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D001426">Bacterial Proteins</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D014815">Vitamins</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>N762921K75</RegistryNumber>
<NameOfSubstance UI="D009584">Nitrogen</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000045" MajorTopicYN="N">Acacia</DescriptorName>
<QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001419" MajorTopicYN="N">Bacteria</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001426" MajorTopicYN="N">Bacterial Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020369" MajorTopicYN="N">Bradyrhizobium</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D050260" MajorTopicYN="N">Carbohydrate Metabolism</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005798" MajorTopicYN="N">Genes, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058865" MajorTopicYN="Y">Introduced Species</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D054892" MajorTopicYN="N">Metagenome</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D056265" MajorTopicYN="N">Microbial Interactions</DescriptorName>
<QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D064307" MajorTopicYN="N">Microbiota</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009584" MajorTopicYN="N">Nitrogen</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009586" MajorTopicYN="N">Nitrogen Fixation</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D063245" MajorTopicYN="N">Plant Development</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012231" MajorTopicYN="N">Rhizobium</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058441" MajorTopicYN="Y">Rhizosphere</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013019" MajorTopicYN="N" Type="Geographic">South Africa</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014815" MajorTopicYN="N">Vitamins</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
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<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Biological invasions</Keyword>
<Keyword MajorTopicYN="N">Bradyrhizobium</Keyword>
<Keyword MajorTopicYN="N">Plant growth-promoting traits</Keyword>
<Keyword MajorTopicYN="N">Rhizosphere microbiome</Keyword>
<Keyword MajorTopicYN="N">Shotgun sequencing</Keyword>
<Keyword MajorTopicYN="N">Tree invasions</Keyword>
</KeywordList>
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	Serveur d'exploration sur les interactions arbre microorganisme
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The Functional Potential of the Rhizospheric Microbiome of an Invasive Tree Species, Acacia dealbata.

The Functional Potential of the Rhizospheric Microbiome of an Invasive Tree Species, Acacia dealbata.

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